Juan-Jose Garces
Juan-Jose Garces
Please, @PoisonAlien. That's not important at all! Thanks!
Sure, thanks a lot! ``` ### .command.error FATAL: container creation failed: failed to add as session directory: path . is not an absolute path ``` ``` ### .command.sh #!/bin/bash -euo...
Hi @pontus. Yes, I'd say that _singularity_ seems to work correctly... ``` $ singularity shell nfcore-sarek-2.7. bash: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8) Singularity> ``` ...and indeed, since I'm...
Hi there, I've got the same problem, with the following code... ``` pb ---------------------------------] 4% eta: 6s Correcting divergent files [=>--------------------------------] 6% eta: 9s Correcting divergent files [=>--------------------------------] 7% eta:...
Perfect, I catch it, I'll try as soon as possible. Thanks a lot for your help!
No yet, sorry! Currently I'm working in another thing and this problem has been set apart... if I get a solution I'll notify you!
Are you guys coming from a Seurat's object? If yes, I solved the problem calculating again PCA values inside monocle... https://github.com/cole-trapnell-lab/monocle3/blob/87f6e88760566065179ae5039d524da7d032cc15/R/cluster_genes.R#L156 ``` seurat2monocle_object
In the pashed folder there's nothing, the script is not generating any file. ``` x21922_mm8/ ├── [ 0] phasing ├── [206K] pileup │ └── [206K] x21922_mm8 │ ├── [ 60]...
Totally sure. Data was generated with `cellranger` pipeline using hg38 reference, so I guess the BAM is correctly built.
Nope, it doesn't work either... ``` Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.