Jessica Rowell
Jessica Rowell
The latest release available on the [releases page](https://github.com/OpenGene/fastv/releases ) is v0.8.1, but downloading the binary installs version 0.9.0. It doesn't seem like the binary is available anymore for v0.8.1. I...
Pull Request (PR) checklist: - [x] Include a description of what is in this pull request in this message. - [x] The dockerfile successfully builds to a test target for...
While trying to install STAT using the instructions [here](https://www.ncbi.nlm.nih.gov/sra/docs/sra-taxonomy-analysis-tool/), I run across a problem running `make` in these steps: `cd ngs-tools` `./configure` `make -C tools/tax` The error looks like this:...
Implement this alongside adding support for additional Biosample packages. Give some user control of field requirements and content rules. Right now custom field functions coerce data types, replace empty fields...
Because we're using NF's getBaseName() function, there can't be any dots in the sample names. So, a sample name like 'BX248355.1' will throw an error. **Place an :x: in a...
Right now the pipeline only accepts paths in the illumina_sra_file_path columns. Refactor to support nanopore data as well. This is tricky because if the user provides both illumina and nanopore...
If you want NCBI to scrub human data from your raw reads, you need to submit the first set of your BioProject's reads to SRA with a delayed release, and...
Files are getting submitted to test server, but report.xml not being generated. **Place an :x: in a Box that Best Matches the Bug's Importance:** * [x] **1** - Most severe...
Integrate cloud-to-cloud support for NCBI submissions. Integrate cloud-to local-to ftp support for NCBI submissions. **Place an :x: in a Box that Best Matches the Feature's Importance:** * [] **1** -...
The submission portion was originally pulled directly from Seqsender code. We could not use their containerized code directly because at the time it wasn't working and because it couldn't be...