Jeong-Woon, Park

icon indicating an email [email protected]

icon company DNACARE Co., Ltd. icon location Seoul, Korea icon location I’m currently working as a genomic analysis researcher. My interests include machine learning and bioinformatics.

Results 6 issues of Jeong-Woon, Park

Dose the result have a difference between Rvtest and R SKAT package?

Hi! I'm interested in rare-variant test, such as burden test, SKAT, SKATO and so on. As I used SKAT test in Rvtest and R SKAT package, The results of p-value...

How can I reproduce the results of trimmomatic in fastp?

2 comment

I want to perform WGS analysis using BGI sequence data. To remove BGI sequence adapters, I used fastp and checked for the presence of the adapter sequence using the grep...

How to use ShapModelInterpreter for SVC (multi-class)?

I ran the function ShapModelInterpreter(X, y), but the error occurs. AttributeError: 'SVC' object has no attribute 'classes_' How can I obtain a SHAP feature importance plot for a multi-class SVC...

Got error running shap_elimination.fit_compute()

3 comment

I ran the function shap_elimination.fit_compute(X, y), but the error occurs on line 493 of feature_elimination.py. ValueError: all the input array dimensions except for the concatenation axis must match exactly. What...

bug

Questions About Using fastp for GBS Data!!!

I am interested in using the fastp tool, and I have a few questions: 1. Can fastp be used for Genotype-by-Sequencing (GBS) data? If so, should I use parameters related...

Subject: Inquiry Regarding repap Output Format Compatibility with fastp

Dear @sfchen , I hope this message finds you well. I have recently started using the repap program to compress FASTQ files, and I noticed that the output files are...