Jennifer Müller

### Description of the bug During the hackathon I was working on an issue for the parameter schema and was checking which parameters I can change in the graphical interface....

Update to pipeline schema doc #1045

2

## Update to pipeline schema doc based on https://github.com/nf-core/nf-co.re/issues/1045 I work on an update of the pipeline schema doc: - 2 sections for adding parameters and updating parameters with the...

Creating vg call module

3

## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should be...

Use local downloaded models for medaka in dragonflye module [feature]

2

**Related To** - [x] Bactopia - [ ] Bactopia Tools **Is this related to a problem?** I want to test how the different polishing methods influence my dragonflye assembly and...

## Description of the bug Since the last update 2.0.0 the Nanoplot command expect a .png output but this output format was removed from version 1.1.1 to 2.0.0. I solved...

Add ampliseq samplesheet creation dependent on #790 in ampliseq

2

The code will be usable after the issue [#790](https://github.com/nf-core/ampliseq/issues/790) in ampliseq will standardize the samplesheet. I have added the following changes to support the automated creation of a samplesheet for...

standardize the samplesheet for ampliseq to the other nf-core pipelines

2

### Description of feature The samplesheet of ampliseq looks different to the other nf-core pipelines. I would propose the standardization of the headers of the samplesheet in ampliseq for: -...