Jeffin Rockey issues

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                                            Jeffin Rockey

on documentation of trimwindows

Dear Mikkel, It would be very helpful if the below information from the documentation at least in brief is included for --trimwindows in the help itself. In the existing help...

Regarding gff2_to_gff3.py script

Hi, Came across a issue after using gff2_to_gff3.py script on a gff from GIGA DB. Steps to reproduce. wget -c ftp://climb.genomics.cn/pub/10.5524/100001_101000/100028/PigeonPea_V5.0.gene.gff.gz python bcbb/gff/Scripts/gff/gff2_to_gff3.py PigeonPea_V5.0.gene.gff gff3ToGenePred PigeonPea_V5.0.gene.gff3 PigeonPea_V5.0.gene.genePred (gff3ToGenePred is from...

annotation files

Dear David, Could you please let me know what are the acceptable annotation formats usable with -a option. I gave a gff and later a gtf. Both of them were...