jeanrjc
jeanrjc
Hello, could you share vibrio31.fna ? Thanks
Ah ok, I found the bug, it's because there is a hit on the very first position but the attC model is truncated. And when a model is truncated, we...
yes, and we should also check for the same case where the attC model is truncated at the end of a contig (not only at the start as in this...
> @jeanrjc could you check the fix I just made > > https://github.com/gem-pasteur/Integron_Finder/blob/73a5801badc5ef29bcea0ed9c7cab4e7166013a7/integron_finder/infernal.py#L96 It works for me ! Thanks
is this merged @bneron ?
Hello, can you check whether the branch fix_find_attc_max solves your pb ?
> a feature (e.g. cassette, attC site) spans over both borders of a replicon You mean, that the feature exists in the circular replicon and is cut in 2 in...
Hello, we'll look into that one we have some time. Meanwhile, you can submit pull requests if you can. Thanks for reporting
I guess it should be possible. Is there any pb with Matplotlib 3.5.2 @bneron ? You could also propose a PR, we're short on time to dev Integronfinder right now.
Hello, Thanks for the update, I started to have a look and then forgot about it. I think there is a bug when we compute the position of the promoter...