Juan Montenegro Cabrera

mysqlclient

1

Hello everyone, Thank you for such a useful tool. I have been using it for years, however I recently ran into a compilation problem that I cannot sort out. I...

Dear Dr Li, Thank you for yet another great tool. It seems to me that the idea of the genome graphs could also be applied to isoforms in a transcriptome...

currently being developed

12

Hi Ivan, I am a big fan of your graphmap project and have used it myself to sort out different pathways/haplotypes in an organelle assembly graph. I am facing a...

RNAseq

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Hi, First of all, thank you for such an interesting tool. I am really interesed in using it in the near future. One question though, how suitable would this tool...

Q: Can I use bigWig data for peak calling?

2

Hi, I have access to bigWig file from an ATACseq experiment, but I do not have the original fastqs nor the bam files of the alignment. I wanted to know...

ERROR: Failed to run HALC:Unknown error 35584

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Hi guys, I've been trying to use Halc for hybrid error correction of PacBio reads. The program has split my raw PB reads into 80 chunks and has successfully finished...

cannot download bed files for dm6 genome

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Hi, I am trying to download embryonic ATACseq bedgraph data from the dm6 genome. I keep getting an error as resource unavailable. Could you point me to the right direction...

Hi, I have recently started to play with single cell data analysis and your biorxiv paper and approach sounds really interesting. I understand how PCA dimensional reduction is probably the...

Hi, I am trying to compare this tool with other similar scaffolding tools for 10 chromium data. I have a a draft genome assembled with discovar using 2x250 PCR-free PE...

long read + RNAseq

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Hi all, I would like to use both long read (isoseq) data and paired-end RNA-seq (Illumina) data to produce gene assemblies. what would be the recommended way to do this?...