Josh Chorlton
Josh Chorlton
Add a new rule to check for `&&` usage with `set -e` set. Recently I got burned by https://unix.stackexchange.com/questions/312631/bash-script-with-set-e-doesnt-stop-on-command/318412#318412 I'm pretty new to Haskell so I figured I'd start small....
I found a hidden option - https://github.com/nextflow-io/nextflow/blob/1e485b32b25ba5a369696c2080432eb06391d641/plugins/nf-amazon/src/main/nextflow/cloud/aws/batch/AwsBatchExecutor.groovy#L119 This option is actually valuable. Basically, the bin dir is not namespaced - processes download it to `/tmp/nextflow-bin`. Now, if you mount in...
Extension on https://github.com/ewels/MultiQC/pull/1512 > Added new Nextclade module. Some of the columns in the Nextclade table should probably removed. Will close https://github.com/ewels/MultiQC/issues/1455. I merged in those commits to my branch,...
Optimizes the category comparison of the linegraph. See the issue is, `d["data"]` does not change while looping through `d["data"]` as best I can tell. So every iteration, the result will...
https://github.com/ewels/MultiQC/pull/1666 upgrades the tablesorter plugin. The new version of tablesorter allows you to specify a default sort order via `data-` html attribute. This PR extends that to thread a `defaultsort`...
Updates tablesorter plugin. JS min file downloaded from: https://mottie.github.io/tablesorter/docs/#Download I updated the CSS to cooporate with the new version. I don't know how best to identify incompatibilities/regressions. It looked good...
https://github.com/ewels/MultiQC/issues/501, and the ensuing [commit](https://github.com/ewels/MultiQC/commit/a9e9b982fd2b9c88cf0ab9d0e9f57d23c51a5194) caused table sorting to strip all non-numeric values. This is pretty big hammer to deal with values such as `300X`. Table values probably shouldn't contain...
Fixes https://github.com/ewels/MultiQC/issues/1637 If the whole file is unclassified, we omit top-5 data from general stats. We also make sure unclassified isn't duplicated in the Top taxa table. - [x] Kraken...
Currently if your static dir looks like ``` /index.html /assets/asset.jpg ``` and you request `/assets`, nginx tries to serve the directory and 403s. I can't think of a use case...
# Summary This PR is a proposal - we should chat further. This PR modifies flow-control logic to only kick in when majority of nodes require it. The use-case is...