Jean-Christophe Grenier

Possibility to specify known reference

2

Hi, would there be possible to have an option to specify a reference so that the REF column respect this one and the genotype calls in the vcf as well?...

Docker

6

Hi Phil! Thanks again for this incredible tool! The following is more a suggestion than an issue in itself. Have you ever think about creating a public Docker for this?...

Email verification

8

Hi @ewels, I've been struggling a bit with Labrador installation on a Docker. I'm still trying to figure it out. I'm almost there, but there's still two things for which...

Informations about simulate tool

1

Hello Mark, Thanks for these tools! I'm currently trying to do some data augmentation of one dataset that I have using your simulate tools. However, I had some troubles finding...

Hello dear support, I tried to run my own training set but it's crashing at the re-training step. Here's the command line I ran on a cluster machine : ```...

Hello, I was interested in getting back the PC coordinates from the incremental PCA step for the dataset I'm currently working with, but saw that the coordinates were not available...

Unable to allocate enough memory

2

Hello! I've been trying to run neural-admixture in train mode on a big dataset containing almost 500,000 samples and 161k markers but I am not able to make it run...

Hello! We are currently using UShER to identify to which clade our consensus sequences are close to. Those sequences are all coming from the NBCI Virus database, in the SRA...