João Capela Ribeiro

Results 11 issues of João Capela Ribeiro

saving and loading models pose problems when there are dots in the absolute path of the model

bug

Add splitter to hyperparameter optimization with cross-validation

enhancement
priority-tier1

"robust_multitask_classifier_model" works well except when loading the model back in (probably related with the custom_objects) (SAME WITH robust_multitask_regressor_model)

bug
priority-tier2

"sc_score_model" not working (Input 0 of layer "dense" is incompatible with the layer: expected axis -1 of input shape to have value 2048, but received input with shape (100, 1))

bug
priority-tier2

"progressive_multitask_classifier_model" not working (ValueError: Index out of range using input dim 1; input has only 1 dims for '{{node strided_slice_1}} ...) (SAME WITH progressive_multitask_classifier_model) in [src/deepmol/pipeline_optimization/_utils.py](https://github.com/BioSystemsUM/DeepMol/pull/86/files/9d4e48237192ac59fdffb1a745bea1f942247bea#diff-351e8e34b992507ca33b45dfef244c025c428a24c3a031239946fa2102a5e6bb)

bug
priority-tier2

"megnet_model" is not working (error with torch_geometric (extra_requirement))

bug
priority-tier2

"multitask_irv_classifier_model" not working (needs 1D featurizer + irv transformer but it is not working) in [src/deepmol/pipeline_optimization/_utils.py](https://github.com/BioSystemsUM/DeepMol/pull/86/files/9d4e48237192ac59fdffb1a745bea1f942247bea#diff-351e8e34b992507ca33b45dfef244c025c428a24c3a031239946fa2102a5e6bb)

bug
priority-tier2

TODO: "mpnn_model" is not working (DeepChem-> AttributeError: 'GraphData' object has no attribute 'get_num_atoms')

bug
priority-tier2

"cnn_model" is not working (raise PicklingError( pickle.PicklingError: Can't pickle : it's not found as _thread.lock)) in [src/deepmol/pipeline_optimization/_utils.py](https://github.com/BioSystemsUM/DeepMol/pull/86/files/9d4e48237192ac59fdffb1a745bea1f942247bea#diff-351e8e34b992507ca33b45dfef244c025c428a24c3a031239946fa2102a5e6bb)

bug
priority-tier2

For some reason when jupyter notebook tries to print an object of the **KerasModel** class the following error is raised: ![image](https://github.com/BioSystemsUM/DeepMol/assets/58153014/2932acd4-952f-491f-bdc7-e54c996c683c)