Jim Henderson

We do have a HiFi assembly made with hifiasm using PacBio long reads. And, as you say, the test text was a very truncated view of the Chr, thanks for...

At the bottom or very near bottom. I made a 8Mbp test file named tst2 with the CCCAATAA at top TTATTGGG at bottom and revcomp version tst2_rc to flip them...

I reran with same HiFi, HiC inputs as on hifiasm 0.19.5-r590 using hifiasm **0.19.6-r595** and **0.19.7-r598** and ***h1, h2 gfa files were created*** with both these versions. As a reminder...

Chenxi, I see some improvements you are making these days. I was wondering if you were still considering changing the GAP_SZ to 100 or if there is some issue with...

Wouter, This comment is being added here as another item to possibly consider if/when revisiting the mean qscore. Not exactly this issue with the mean qscore, but having read your...

Wouter, Yes, adapters had occurred to me as well. Though, after trimming, ignoring those bases seems something of a fiction doesn't it (and I wonder how low qual prefixes affect...