jayoung
jayoung
Hi there, I'd like to add another voice for providing support for longer reference sequences: it already seems useful for some genomes, and as better assembled and larger genomes come...
Hi there, I only just discovered your package - I'm excited to start being tidy with my GRanges! Apologies if I missed something, but I think I am requesting an...
Hi there, I'm parsing a whole bunch of Genbank records to get CDS sequences, and found one weird record that messes up my pipeline. The Genbank accession is S81162. It...
hi there, I just started exploring ggseqlogo - it looks great! I was wondering if it would be possible to add the option to not use the small sample correction...
Dear Eric and colleagues, Thanks again for your really handy program - the gene name thing used to drive me crazy and now it doesn't: so nice! Here's a suggestion:...
hi there, I am trying to reroot a treedata object, and I find that the tip.label and node.labels are getting lost from the phylogeny (they're getting replaced with `c("1","2","3",etc)` The...
Hi there, I think I found a problem with the way ggbio handles track labels when I add a main title to the plot. I think the code I've included...
hi there, I've been reading in some multiple sequence alignments, as DNAStringSet objects. They're nucleotide alignments that encode proteins. I've been playing with using 'translate', but it looks like it's...
hi there, I was excited to see there's a findPalindromes function - this could be really useful for a project I'm working on at the moment. I'll probably want to...
hi there, Another thought about findPalindromes. Something about the way it treats mismatches between palindrome arms is a little unintuitive, biologically, while it is probably correct in the formal sense....