Jason Gallant

Yes, it's a haploid assembly. I took extra care also by running funnotate clean and funnotate sort prior to the pipeline if that's helpful I think the portion of the...

OK, I'll give those settings a shot and see what happens. But yes, I'm feeling adventurous (adventure is my middle name! ha-- it's actually Raymond). Send me some info, and...

Hi Jon, Thanks for the detailed guidance on this. One quick question is that there are several PASA gff files output in my previous training run, which one should I...

A second note, I tried rerunning funannotate 1 with the parameters you suggested before (and increasing the max intron length). I ended up slightly more genes: Progress: 2939 complete, 0...

+1 I had a user report in on this issue from https://www.efishgenomics.com/blast_search/ with the same issue. I disabled tree for the time being, but it sure is much messier looking....

Sent it along just now! Thanks for having a look.

Hi Colin, Thanks for the quick attention on this, and the detailed explanation. I did wonder if this was what was going on. I tried implementing your suggestion here: return...

Hi @cmdcolin can confirm that I'm using JBrowse v2.12.2 for @jbrowse/react-linear-genome-view, and that indeed  config.adapter.dontRedispatch is set for config region and chromosome

Should add that I'm creating a config file using react, I'm wondering if there might be an issue with that. Here's the full code: import React, { useState, useEffect }...