janpb

Late for the party, but following option can overcome installing extensions in `~/.vscode-oss`. However, it doesn't get rid of the directory itself (unfortunately). You can use the `--extensions-dir` option to...

Dear Dr. Cox, thanks for your reply. I rerun the command several times without success, i.e., always getting `Error: [gateway] Gateway Error (408 Request Timeout)`. I could get the dehydrated...

Dear Dr. Cox, thanks for the detailed answer. My use case would be Number 4: verify the completeness of a rehydrated dataset. I did hope to have a checksum for...

I just tried to install RDPTools. Replacing `ant -f` with `ant -D"javac.source"=1.6 -D"javac.target"=1.6` in the `Makefile` seems to compile. However, the installation aborts since it cannot fetch the traindata `data.tgz`...

Dear @malton-ont , forgot to add this. No errors without modbase detection.

@malton-ont I can't share the original data, but I can share another pod5 file showing the same error. Please let me know how to get it to you.

@malton-ont the file size is 475 Mb, I assume this is too much as attachment for an issue.

I added two small datasets with 250 reads and corresponding `dorado -vv` logfile. Both subsets originated from the same `pod5` file: - `PAS39322_ca360a4c_add5d610_1.batch-00.zip`: errors - [PAS39322_ca360a4c_add5d610_1.batch-00.zip](https://github.com/user-attachments/files/15551866/PAS39322_ca360a4c_add5d610_1.batch-00.zip) - `PAS39322_ca360a4c_add5d610_1.batch-01.zip`: no errors...

@malton-ont: It seems to be fixed, I do not get these errors anymore with my data sets. Thanks. It would help if somebody else also can confirm this message is...