jamlover

Well, one thing I found on another thread while trying to get things working is useful for future reference anyway - To get "make -j all" to work properly in...

If I try "make config-edit-user" followed by "make -j all," I get this error: make[2]: Entering directory `/data/progs/falcon/FALCON-integrate/FALCON-make' python -c 'import pip; print pip' || python get-pip.py --user pip install...

Chris, I did the "make config-edit" before, which was how I got make -j all to work, but that led to the git error. When I try running the git...

Hi. I don't have anything to do with Rcorrector but here's a link to a few tools including a script that will do what you requested: https://github.com/harvardinformatics/TranscriptomeAssemblyTools Specifically you want...

Agreed.

I am experiencing a memory issue too, perhaps because of the amount of data I am dealing with. I have 56M ONT reads that are about 108GB of data. Sequences...

Update to my previous comment. I thought by reducing the amount of input to about 1.77M reads I had finally succeeded as the cluster command ran for over six hours,...

Thanks for the response. I will definitely look into your suggestions and see if some of them can be helpful. At present however, it does look as though my current...

Eduardo, I am providing another update on the progress of my clustering. Dividing my input data into fourths, trimming adapters with porechop, and keeping sequences only in the range of...

Some more fodder for the discussion. Regarding your comment about consensus sequences, the sequences in the the cluster sequence files and clusters in the summary file do not include consensus...