James M. Hogan comments

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                                            James M. Hogan

FASTA parser doesn't support comments

Usually in the header, but I can't see any reason not to support it either.

Suffix arrays for alignment

Definitely welcome that functionality if you are interested.

Speed bottleneck: Avoid re-parsing bam header when reading many intervals

Thanks for the post. Sounds a sane approach and if I understand the proposal simpler cases would be unaffected. Happy to take a look. On Fri., 18 Oct. 2019, 11:25...