Jack Nicoludis

Regarding i_pae filtering, from [this file](https://github.com/nrbennet/dl_binder_design/blob/main/af2_initial_guess/pdb_interfaceAF2predict.py) the i_pae is calculated as: ``` pae = prediction_result['predicted_aligned_error'] pae_interaction1 = np.mean( pae[:binderlen,binderlen:] ) pae_interaction2 = np.mean( pae[binderlen:,:binderlen] ) pae_binder = np.mean( pae[:binderlen,:binderlen] )...

Thanks - that makes sense. I'm having trouble figuring out how to access the system and/or topology of the current running Isolde simulation using the ChimeraX python shell. Could you...