Vadym
Vadym
## Description As we need to bump black version due to security issues: https://github.com/Clinical-Genomics/BALSAMIC/pull/1420, I've also took the opportunity to update the dev requirements and update GitHub Action versions ####...
### Need - As a user, I have noticed confusing parts in the documentation that need urgent improvements for a better experience. I suggest clarifications to enhance usability. - As...
### Need As a developer, I want to migrate Balsamic to Snakemake 8 to stay up-to-date with the latest features in Snakemake, ensuring that my bioinformatics analyses take full advantage...
### Need As a Balsamic developer, I want to simplify the QC extraction and validation workflow, so that I can efficiently manage the increasing complexity of various workflow types, panels,...
### Need As a Balsamic developer, I would like the process of handling reference files from the CLI to be more straightforward. This improvement will help me efficiently manage and...
### Need As a Balsamic external developer I would like to be able to install Balsamic using poetry, so that I can effortlessly manage dependencies in isolated environments (i.e. [Bianca](https://www.uppmax.uu.se/resources/systems/the-bianca-cluster/))....
### Need As a Balsamic developer, I want to have enhanced flexibility and granularity in specifying computational resources for my rules. Currently, thread counts serve as the primary method for...
### Description We need to enable IGH DUX4 detection for hg38 and update the script to consider hg38 coordinates. It was Initially meant to be addressed here: https://github.com/Clinical-Genomics/BALSAMIC/pull/1397. ### How...
### Need As a BALSAMIC developer, I want the recurrent container issues and failures to be resolved so that I can experience improved efficiency and reliability in testing and deploying....
### Need As a Balsamic developer, I want to improve the codebase by refactoring existing code to enhance maintainability, readability, and performance, ensuring the long-term sustainability of the pipeline. ###...