intikhab

Dear Shifu, I had a related question on point 4 of fastv: fastv accepts FASTQ files as input, and then: 1. performs data QC and quality filtering as fastp does...

Hi Jianshu, gsearch looks very powerful but it also only provides ANI and closest reference genomes. Finding closest lineage still requires something like accession to taxon id and taxon id...

Dear Jianshu, Thanks for your point, yes, I agree each NCBI genome is attached to a taxonomy. However, for each of the query genome you need to decide which taxonomic...

Hi Donovan, Regarding GTDB taxonomic lineage assignment at genus, family, order, class, phyla or kingdom level, do you use ANI values below 85%? E.g. If the close genome AF is...