Inti Pedroso

Multivariate Model

3

Hi, Is it possible with `bambi` to fit multivariate models. I am looking into fitting a model with (at leas) one covariance matrix and two outcomes. I want to estimate...

Error in variable model

1

Hi, is there a way to fit error-in-variable models? That is models where the predictor has an associated measurement error. Looking forward !

Hi, What is the best way to find sequences that are present in resequenced individuals but are missing from the reference genome? I have a reference renome for a plant...

Hi, is there a way to fit multioutput gp ?

stochastic calculations inside emcee

10

Hi, I have a model for which I am using emcee to sample three parameters. I have trouble getting good acceptance ratio. I have increased the number of walkers to...

Compressing temporary files

2

Hi, Why are temporary files not compressed? It is due to impact of performance? would it be possible to add an option to opt for compressed output to reduce disk...

Hi, It would be great to have a way to continue a previous run that did not finished all jobs without re-running those jobs that finished OK. This would be...

Pooled samples and different ploidy

2

Hi, What would be the best way to handle pooled samples and to discover alleles and obtain allele frequencies on the pools? Is it possible to genotype polyploids? Many thanks...

missing values in varianceDecomposition

9

Hi, In my application I have two traits where only a subset of the samples have observation on both traits. I want to use the kernel matrix for the samples...

Compress fasta files to reduce size of DB after de-decompression

1

Hi, would it be possible that you distribute the`*seed.fasta` and `*consensus.fasta` files in compressed form, e.g., gz. After decompressing the `uniclust90_2018_08.tar.gz` the fasta files are big and it would be...