Teresa Murta issues

Results 8 issues of


                                            Teresa Murta

[issue] with total spectrum generation

Hi Alan, I have been using the code below to create a total spectra for a specific mask (saved in the roi variable) that I load but it doesnt seem...

[FEATURE] struggling to pre-process orbitrap data

Hi Alan. I have got some orbi sims data (exported using profile mode) which I'm not able to pre-process. Essentially, I think the data has the top of the peaks...

[FEATURE] ppm rebin

Hi Alan, When using the pre-processing option pp rebin, all peak centroids are shifting to the left. The larger the ppm, the larger the shift. Is this supposed to happen?...

[FEATURE] not able to read SIMS data

Hi Alan, I have tried to load ToF SIMS data (both grd and tofs files) but Im getting the following error: Abstract classes cannot be instantiated. Class 'SIMSParser' inherits abstract...

[error] maybe OBO related

Hi Alan, While using the most recent versus of SA in git and attempting to generate the total spectrum, Rory is getting the following error: Mar 19, 2021 11:39:58 AM...

Hi Alan, I started to get the following error recently: > In f_saving_spectra_details (line 16) ! Running pre-processing and generating representative spectra... Warning: Error occurred while executing the listener callback...

Statistical test between ROIs.

Hi Alan, I think it could be really useful to add the option to perform univariate tests between ROI. I'm planning to write a function illustrating what I mean and...

Combining multiple imzmls files in order to be able to performed all the post-processing options in the combined version of the data.

Hey Alan, I think it would be really useful to be able to combine multiple imzmls. The idea would be that we could mask each file as we wish (could...