Indraniel

Seems like this work is already is progress: https://github.com/Olical/conjure/pull/348

I needed access to a Google Cloud Platform (GCP) storage bucket containing a large number of CRAMs that had the [requester pays](https://cloud.google.com/storage/docs/requester-pays) feature enabled. I found using [`gcsfuse`](https://github.com/GoogleCloudPlatform/gcsfuse) on this...

Interesting. As a neophyte with `vg`, it appears from the wiki pages that `vg genotype` is more preferred over `vg call`. I saw [very little documentation about `vg call`][0]. [0]:...

This situation happens when there are no reads found for a given region in a given SV.

`sff2fastq` was most developed on MacOS and Linux. I really didn't account for windows, mainly because I don't use that operating system. If your changes compile well, feel free to...

Thanks for the response and sharing a short-term approach regarding the Python API! I must admit that it makes me leery to use `dsub` like so in a production service...

Wasn't hexdump used to identify bam vs cram filed? On Thu, May 18, 2017, 18:53 Dave Larson wrote: > Seeing errors like: > > /opt/lumpy-sv/bin/lumpyexpress: line 15: -n: command not...