Imran McGrath comments

Repositories
Issues
Comments

Results 4 comments of


                                            Imran McGrath

Multi-dimensional indexing (e.g. `obj[:, None]`) is no longer supported.

Thanks @Scoott, this worked for me. Submitted it as a PR but this repo seems to be not actively maintained. If anyone wants to install a version with this fix...

how to import a custom motif matrix

+1, I am interested in importing a set of motifs in .meme format to PWMatrix or PWMatrixList format: https://resources.altius.org/~jvierstra/projects/motif-clustering-v2.0beta/consensus_pwms.meme Is there any tool to do this in R? I see...

AttributeError: Module 'scipy' has no attribute 'arange'

+1 to this issue.

High fraction of cells empty - alert from xeniumranger after import

Thanks for the point of reference for the low coverage! Xenium's segmentation resulted in 4.5% empty. In Xenium Explorer looking at the unassigned (presumably empty) cells, they tend to be...