imilenkovic

specifying the color range

1

Hello, I was wondering if it would be possible to specify the range in which a color gradient will be applied? For example:  in this plot the range is...

Visualizing gene annotation on top of reported/discovered isoforms

2

Hello, I was asking if there is a way to add the gene annotation with all the annotated exons on top of the plot showing all isoforms (annotated and unannotated)...

Associating read IDs with transcript IDs

14

Hello, I was wondering if there is a way to associate transcript IDs to their respective read IDs, so that one would be able to subset the bam file to...

Understanding filtering, Nmod and Ncanonical

1

Hello, I have a question about filtering the 10% lowest confidence modification calls, and how Nmod and Ncanonical values are obtained. If modkit (by default) first filters out the 10%...