Ivan Merelli

Error: invalid character '<' looking for beginning of value

1

Hi, I'm using dbxcli since almost one year without problems, on multiple servers and with multiple users. A few days ago on some servers (and with all the users of...

Issues subsetting AnnData object with reticulate

3

Hi, I'm using reticulate to perform the scanpy tutorial for single cell data analysis. #R library(reticulate) reticulate::repl_python() #mkdir data #wget http://cf.10xgenomics.com/samples/cell-exp/1.1.0/pbmc3k/pbmc3k_filtered_gene_bc_matrices.tar.gz -O data/pbmc3k_filtered_gene_bc_matrices.tar.gz #cd data; tar -xzf pbmc3k_filtered_gene_bc_matrices.tar.gz #python import...

Error while pushing images

20

Sorry to bother you again... I'm now trying to push images into sregistry using singularity from another server. I added the remote and provided the token: singularity remote list Cloud...

Configuring base_url for sregistry when deployed behind an Apache reverse proxy on port 80

3

Hello, I'm trying to deploy sregistry behind an Apache reverse proxy on port 80 and have run into some issues with the application's URLs. I've set up Apache to route...

Error in self$exists(name) : HDF5-API Errors:

1

Hi, I'm getting this error converting a Seurat object into hd5. The thing is that in the end the object seems ok, any hint about what is going on? >...

custom chromosome

1

Hi, your tool is very nice and works smoothly using standard genomes (I'm converting juicer hic files from hg19 to hg38). But I have custom experiments with an extra chromosome,...

Example not working

1

Hi, I'm trying to run this example: Tensor-cell2cell-PBMC.ipynb with c2c.__version__ = '0.7.3' But at this step: fig, error = tensor.elbow_rank_selection(upper_rank=25, runs=10, init='svd', # If it outputs a memory error, replace...

"Save and Export Notebook as" is not working

1

Hi, starting from this configuration ``` pip list | grep jupy fps_jupyterlab 0.6.3 jupyter_client 8.6.3 jupyter-collaboration 3.0.0b6 jupyter-collaboration-ui 1.0.0b6 jupyter_core 5.7.2 jupyter-docprovider 1.0.0b6 jupyter-events 0.10.0 jupyter-lsp 2.2.5 jupyter_server 2.14.2 jupyter_server_fileid...

Hi, I installed all the prerequisites of TITAN, also paccmann_predictor, to train the titan model. But I have this issue with the paccmann_predictor package. Can you help me? ``` (titan)...

Compiler problem with tcrmodel.static.linuxgccrelease

1

Hi, I downloaded the binaries rosetta.binary.linux.release-371, but I have an error using tcrmodel.static.linuxgccrelease It does not seem a problem with my local compiler, but with the compiler used to build...