Igor Manassypov comments

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                                            Igor Manassypov

Question:./bin/colabfold_batch -h results in ModuleNotFoundError: No module named 'opt_einsum'

installing additional dep appears to have resolve the above issue, ./bin/python3.9 -m pip install opt-einsum

Question:./bin/colabfold_batch -h results in ModuleNotFoundError: No module named 'opt_einsum'

Another dep failure, ./bin/colabfold_batch --amber --templates --num-recycle 3 ~/Downloads/O15552.fasta FFA2output Traceback (most recent call last): ... File "/Users/igor/Downloads/localcolabfold/colabfold-conda/lib/python3.9/site-packages/alphafold/model/tf/shape_helpers.py", line 16, in import tensorflow.compat.v1 as tf ModuleNotFoundError: No module named 'tensorflow'

ModuleNotFoundError: No module named 'genie', playbook_overlay_precheck.yml

this can be resolved via satisfying missing deps, pip3 install "pyats[library]"