Michael Gargano
Michael Gargano
I see the annotation files have made it to the release for other ontologies the obo and json ontology files are also in the release. Could we make those get...
https://github.com/exomiser/Exomiser/blob/e2987aefc45e265d712a0b90b7dbff68af4dba95/exomiser-core/src/main/resources/templates/results.html#L160 This link is hard-coded to be hg19 and not dependent on the exomiser genome assembly selection.
- [ ] Test locally if the python PR is still valid in v2 - [ ] Make changes as necessary - [ ] Deploy to pypi/conda - test env...
https://github.com/exomiser/Exomiser/blob/54a50c8d09b1d59839c24f2749aa8ff4627a7959/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/proto/ProtoParser.java#L92 Hi Jules, Daniel and I have found in our analysis pipeline with exomiser that we are allowing v2 phenopackets through the command-line runner with permissive parsing. With the schema...
For our specific project at the lab we implemented exomiser into a nextflow workflow along with others. Its time now to elevate exomiser to its own workflow and publish it...
I write this with a heavy heart knowing that this change will (most likely) be massive. Currently we are generating the protocol buffers with the maven plugin: protobuf-maven-plugin. It appears...
Filtering and Sorting for tables. Sorting on most table fields. Filtering currently only happens #357
**Overview** Implement current HistoPheno onto gene pages Enhancement have links for individual x-axis **Considerations** What is the expected behavior on non-human gene pages? Should we make different slims for different...
## Summary This PR addresses issue #313 by implementing comprehensive link checking for documentation and fixing several broken links. ## Changes Made - **Added GitHub workflow** for automated link checking...
- enhances the deploy python script - updates ascopes protobuf plugin to a stable version - syncs the python package version with the current deployed.