ideshigenomics issues

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                                            ideshigenomics

Coverage of Synteny

Hello I have Bacterial a 5.4 mbp draft genome of Bacteria with 64 contigs. However, the synteny blocks only covers a small portion (first two contigs) of gemome, even for...

Error in ./run_test.sh for resfinder db

Activating conda environment: .snakemake/conda/5d8473ea092af8eb4c5ecabee5c39052_ Select jobs to execute... RuleException: CalledProcessError in file "/home/ideshi/hAMRonization_workflow/rules/resfinder.smk", line 45: Command 'source /home/ideshi/anaconda3/bin/activate '/home/ideshi/hAMRonization_workflow/.snakemake/conda/5d8473ea092af8eb4c5ecabee5c39052_'; set -euo pipefail; mkdir -p results/NDM_biosample/resfinder-fna run_resfinder.py --acquired --point --disinfectant --species...