Ibrahim Hadzic

Hi, I would like to extend the framework to work with 3D (medical) images (e.g. size 128x128x128). Since choice of the autoencoder's architecture is important, I was wondering if you...

Hi! Could you please explain what is the purpose of ZeroInit in reversible blocks? Thanks! https://github.com/tychovdo/RevGAN/blob/2af25e6a8176eaab3d424db45fb6ee2cfc5dc9a3/models/networks3d.py#L233-L321

Allow `.seg.nrrd` extension for NRRD labels

1

Really happy that v2 introduced NRRD support! It would be helpful to allow labels to be named with `.seg.nrrd` extension. Currently, they have to have `.nrrd` extension, or they won't...

Custom (MONAI) networks performing poorly

2

Hi! I am trying to train UNet-like networks available in MONAI by extending the `build_network_architecture`. So far, I have tried `FlexibleUNet` and `VNet`. Both performed extremely poorly. Neither of the...

[REQUEST] Shortening error messages of certain modules similarly to frame suppression in tracebacks

2

**How would you improve Rich?** Allow automatic shortening of error messages. Could be implemented similarly to frame suppression. A shortened message would keep only, for example, 3 lines, and the...

VICRegL error when grid size is too big

5

## Reproduce Run https://docs.lightly.ai/self-supervised-learning/examples/vicregl.html with `transform = VICRegLTransform(n_local_views=0, global_grid_size=9)` (default is `global_grid_size=7`). If you run it on GPU, you'll get a very ugly CUDA error that doesn't say much. If...

Raise the exception when LoadImage has a reader specified but it is not installed

6

**Describe the bug** Running `LoadImage(reader="ITKReader")` without `itk` installed will just warn that `itk` is not installed and will proceed with using `PILReader` instead. https://github.com/Project-MONAI/MONAI/blob/33afaefff925dce45b8331e8290f234a4d95fd51/monai/transforms/io/array.py#L185 **Expected behavior** If the specified reader...

Resolve the confusion about dimension order and orientation through their respective keyword arguments in `LoadImage`

4

**Is your feature request related to a problem? Please describe.** - As a PyTorch user, I was surprised that MONAI does not follow PyTorch's dimension order convention (MONAI: `WHD`, PyTorch:...

Implement surface distance/dice scores

1

## 🚀 Feature Hi! It would be great to include surface distance/dice scores from https://github.com/deepmind/surface-distance ( https://docs.monai.io/en/stable/metrics.html#average-surface-distance, https://docs.monai.io/en/stable/metrics.html#surface-dice). ### Motivation NSD (Normalized Surface DICE) is quite present in the medical...

Parent `Compose`'s `map_items` is passed down to a child `Compose` even though it specifies its own

1

**Is your feature request related to a problem? Please describe.** I tried defining a `Compose` within a `Compose` with a different `map_items` argument, but the one from the parent `Compose`...