(major) john (major)

Results 54 issues of (major) john (major)

# A question and a Bug Report ## Is setting -B very low going to negatively impact var calling? - I ran a parameter space scan of -X and -B...

bug
question
performance

i reviewed like 40 different remote mounting solutions. Yours was one of the fastest and most stable. Nice wok!

good first issue

Hello- I have been unable to get fastv to render any visualizations, and realized from the example reports that plotly was being used, but not listed as a dependency. Does...

We have used alignstats extensively for years. Its the most comprehensive set of alignment metrics for QC I've found. So thank you.

Needs to be re-generated.

[Enter steps to reproduce:] 1. ...From command console chose run all tests. 2. ...from the command line 'pytest' completes and runs all 4 tests successfully. **Atom**: 1.58.0 x64 **Electron**: 9.4.4...

I downloaded the R1 and R2 fasta files for this sample referenced in the paper. I aligned the reads with sentieon bwa mem, produced a valid BAM/BAI file. When I...

Hello Brent- This work looks very promising, I'm going to keep my eye on it's development for sure. Also: I encourage you to investigate octopus! We use octopus as the...

Ahoy! I am quite excited to explore in more detail how strobealign behaves in b37 & hg38 across all of the GIAB samples ( at least for NOVA reads, others...