Joost Kranendonk

icon indicating a website link http://nl.linkedin.com/in/joostkranendonk/

icon company HZPC Research B.V. icon location Netherlands icon location Accelerate potato breeding utilizing biological and genomic data research

Results 4 issues of Joost Kranendonk

add support for varargs help message

3 comment

adds help from varargs annotations follow up of 3eecce3a45756ec5eff607e48b6b6c37364ed6e2 and #29

vcfallelicprimitives duplicates INFO (Number=1) tags

10 comment

Hi! I am working on di, tri and tetraploid VCF data called using FreeBayes. I'd like to extract allelic primitives and I am using `vcfallelicprimitives` for this. It works great,...

bug

`dbfs ls -l` output familiar to UNIX `ls -l`

I find the output of `ls -l` a bit odd, especially modification_time is hard to read. So I wrote a small awk script to process the output to make it...

Slice VCF/BCF files

I regularly find myself querying chunks from a variant file for educational, demo, review or testing purposes. For this I use `bcftools view -Ob -r Chr.8:1-1000000` for example. This nicely...

enhancement
P2: Desirable