sqmao

./run-asm-pipeline.sh -m diploid merged_nodups.txt polish.fasta

5

...detecting misjoins in round 0 assembly: :) -p flag was triggered. Running with GNU Parallel support parameter set to true. :) -c flag was triggered, starting calculations with 5% saturation...

when using the tools in 100000 cells, The problem met!

1

> test

#### C:\Users\msq\temp1> docker exec higlass-container python higlass-server/manage.py ingest_tileset --filename .\50k_output.cool --filetype cooler --datatype matrix uid: YG6qIG1WS8iMmff_j3E2Ag Traceback (most recent call last): File "higlass-server/manage.py", line 22, in execute_from_command_line(sys.argv) File "/opt/conda/lib/python3.6/site-packages/django/core/management/__init__.py", line...

when I use local python to install higlass-manage ,I use the next command "pip install higlass-manage" error.

1

Collecting pysam (from clodius>=0.10.3->higlass-manage) Using cached https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz Complete output from command python setup.py egg_info: '.' 不是内部或外部命令，也不是可运行的程序 或批处理文件。 '.' 不是内部或外部命令，也不是可运行的程序 或批处理文件。 # pysam: no cython available - using pre-compiled C #...