tredparse

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Hi, I would like to know if this tool can be used to get CGG repeats in FMR1 gene? I found in a publication that they were able to get...

adarsh-pp

Cannot find tredprepare.py

1

Hello. I'm trying to add loci to be searched for, but I don't see tredprepare.py anywhere.

DylanSteinecke

Hi, Thanks for developing such a useful tool. I wonder if we need to filter the calls based on such as `FullReads`, `PartialReads`, `RepeatReads`, `PairedReads`. If the answer is YES,...

YiweiNiu

Hi, For my case, i created a virtual environment that has python 2.7.18 , installed tredparse in this virtual environment and git clone the tredparse repository. I have the following...

MeiShu00

hi!! I am trying to use your tool for analyzing HTT sequences. I think I correctly installed the program, since I have been able to use the first script without...

alessia677

Bumps [bcrypt](https://github.com/kelektiv/node.bcrypt.js) from 0.8.7 to 5.0.0. Release notes Sourced from bcrypt's releases. v5.0.0 Fix the bcrypt "wrap-around" bug. It affects passwords with lengths >= 255. It is uncommon but it's...

dependabot[bot]

Bumps [jquery](https://github.com/jquery/jquery) from 2.2.4 to 3.5.0. Commits 7a0a850 3.5.0 8570a08 Release: Update AUTHORS.txt da3dd85 Ajax: Do not execute scripts for unsuccessful HTTP responses 065143c Ajax: Overwrite s.contentType with content-type header...

dependabot[bot]

Is there a target environment for installing the web based application? I have tried the instructions in both Ubuntu 16.04 and Ubuntu 18.04 on AWS and have gotten errors related...

k-chaney

I wonder if it is possible to use a custom genome as ref? such as cotton?

weifei888

Hi, I'm trying to use Tredparse against some samples aligned on hg19_nochr. The calling seems to works fine (ends without errors). However, reports are outputs on hg38 coordinates and samples...

erdanieee