tredparse
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tred.py not working with test data
Hi,
For my case, i created a virtual environment that has python 2.7.18 , installed tredparse in this virtual environment and git clone the tredparse repository. I have the following questions regarding the tool:
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I understand that using the tredprepare.py, we can add additional str regions. Would your tool work with repeats that are dinucleotide repeats?
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After running the tredprepare.py, i opened the .json file to fill in the additional details:
Could i check which are optional and what is the difference between motif and repeat? -
Lastly, i tried
tred.py tests/samples.csv --workdir workbut there was an error:
Thank you !