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tred.py not working with test data

Open MeiShu00 opened this issue 4 years ago • 0 comments

Hi,

For my case, i created a virtual environment that has python 2.7.18 , installed tredparse in this virtual environment and git clone the tredparse repository. I have the following questions regarding the tool:

  1. I understand that using the tredprepare.py, we can add additional str regions. Would your tool work with repeats that are dinucleotide repeats?

  2. After running the tredprepare.py, i opened the .json file to fill in the additional details: image Could i check which are optional and what is the difference between motif and repeat?

  3. Lastly, i tried tred.py tests/samples.csv --workdir work but there was an error: image

Thank you !

MeiShu00 avatar May 04 '21 04:05 MeiShu00