huBioinfo
huBioinfo
Hi, you can try the code below. ``` dir_in
Hi, The R version 4.1.3 and Python version 3.7.3 can be used to install the CytoTalk R package and generate final results successfully. Please try this, thanks.
Hi, We just updated the steps for installing both the "pcst_fast" Python module and the CytoTalk R package. Now all the commands can be run in the R console and...
Please see the "feature_RcallPy" branch for correctly installing the 'pcst_fast' python module, which can be called when you run an R script. https://github.com/tanlabcode/CytoTalk/tree/feature_RcallPy
Hi Jun, I'm very sorry for replying late. Yes, CytoCommunity can be used for spot-based spatial omics like 10x visium data, but needs an additional procedure, that is, cell-type deconvolution....
Hi, thanks for pointing out this issue. I'll add some details in the tutorial. The node_attribute.txt stores a matrix with rows representing cells and columns representing cell types. For example,...