hschult

Hi Maximilian, thank you for looking into it. I hope you had a nice holiday. I can confirm that adding placeholder features to the dataset resolves the error. I have...

Hi @Allischoo, Your first version is the recommended approach. BINDetect will generate a background distribution by randomly subsetting peaks. This could explain why you see fewer sites with option 2...

Hi @matteozoia4 and thank you for using TOBIAS. I need more information to give a definitive answer for example the TOBIAS call would be a good start. However, as you...

Hi Ryan, thank you for using TOBIAS! Yes, you are right the default BINDetect clustering threshold is 0.5 but there was no way to change it. I have added a...

Yes, I understand now. You want to create clusters independent of the underlying condition so they can be used to compare multiple analyses. While it should work to combine the...

Hello @Freeda2023, the error comes from the `adjustText` package because they changed the name of one of their parameters. We have already fixed this in the #270 pull request. If...

`0.16.2-b` is the correct version your error may have a different reason. However, I need more information to help you. Would you kindly provide your BINDetect call or even better...

Hi, please check #125. There you can find a short description of generating such a file.

Hi @rejo27, and thank you for your interest in TOBIAS. Unfortunately, I need more information to help you. For example, I'm unsure what you mean by "single mode". Did you...

Thank you this made it very clear! 1. No, the way you run BINDetect, comparing scores between timepoints is impossible. BINDetect does a quantile normalization to enable comparison between conditions....