Alec hong
Alec hong
I had the same error in cellphonedb plot dot_plot function to inovke the R script in python environmnet. Had any thought for this issue? Best
@lgautier had solved these problem?
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There are weird in setting the os.environ["R_HOME"]=rpy2.situation.get_r_home() The error showing below: >>> import rpy2 >>> os.environ["R_HOME"] Traceback (most recent call last): File "", line 1, in File "/share/apps/miniconda3/envs/cellphonedb_20220616/lib/python3.8/os.py", line 675,...
if i try to import the rpy2.robjects, it complaint about the error lying below: 
The total verbos for import rpy2.robjects $python -v -c "import rpy2.robjects" import _frozen_importlib # frozen import _imp # builtin import '_thread' # import '_warnings' # import '_weakref' # import '_io'...
It was very weird, when i rerun the same command, it was successful. Why was the error generated occasionally ? what happen on this binarization.py scripts? could anyone help? any...
@zhiweixiao you can push the batch-remove embedding coordination from seurat into monocle3 to solve this issue. Hope help.
> Hi, could you share the session info and the code that gave the error? The code post below: library(Seurat) library(dplyr) library(rliger) library(SeuratWrappers) library(stringr) library(plyr) library(data.table) pbmcsca