Yevhen Vainshtein comments

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                                            Yevhen Vainshtein

Issue after conda install: Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module)

Are there any updates on the issue? I've got a very same problem.

Citing Porechop

same question: how one could cite the Porechop?

Stuck on Pilon polishing

I should say, I found the reason why the Unicycler stuck, but it does not really help to solve the issue: when constructing the index bowtie2-build can't handle fasta files...