Pi π

Hello, thanks for your excellent work! I have some questions about the residues you excluded and included in the protein sequence. I found this code: ```python def remove_non_residue(sequence: str) ->...

Dear team, I followed your instruction (https://wiki.uni-konstanz.de/ccp4/index.php/Coot#Installing_Coot_on_Linux) to install Coot on Ubuntu 22.04LTS (6.5.0-41-generic). When I run `coot` I faced this problem: ``` /usr/local/src/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/libexec/coot-bin: /usr/local/src/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/lib/libssl.so.10: version `libssl.so.10' not found (required...

parseMMCIF with header=True results in error

23

With some pdb_id, error occurs: ```python pdb_id = "7cth" struct, header = prody.parseMMCIF(pdb_id, header=True) ``` Error: ``` ValueError Traceback (most recent call last) Cell In[128], line 26 23 json_dict["dialect"] =...

Decomposing complex when ligand is a standard residue or protein/RNA/DNA containing HETATM.

4

I want to decompose a complex into protein, nucleic acid and ligands. If I select "protein and not hetatm" for protein "nucleic and not hetatm" for nucleic and "hetatm and...