Huseyin Kir

owlapi version upgraded to 4.5.22

1

Owlapi version upgraded from `4.5.19` to `4.5.22`: - No build errors - All unit tests passing - 'maven clean package' is successful Should we check anything else to ensure package...

Resolves [#886] - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn site`...

robot extract/merge should optionally inject provenance

15

Resolves [#893 , resolves #893] - [x] `docs/` have been added/updated - [x] tests have been added/updated - [x] `mvn verify` says all tests pass - [x] `mvn site` says...

Reduce operation with property chains

1

For the [given ontology](https://github.com/ontodev/robot/files/8942924/test_reduce.zip): ```owl Prefix(:=) Prefix(owl:=) Prefix(rdf:=) Prefix(xml:=) Prefix(xsd:=) Prefix(rdfs:=) Ontology( Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) ############################ # Classes ############################ # Class: () SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( ))...

new extract command method: subset

6

Resolves [#497, resolves #497] - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ]...

Updating to OWLAPI 4.5.22

2

Resolves [owlapi#1004](https://github.com/owlcs/owlapi/issues/1004) - [ ] `docs/` have been added/updated - [ ] tests have been added/updated - [ ] `mvn verify` says all tests pass - [ ] `mvn site`...

annotate command axiom-annotation parameter fails

3

Robot annotate `--axiom-annotation` parameter is always giving the below error: ``` java.lang.UnsupportedOperationException: errors#AXIOM TYPE ERROR cannot annotate axioms of type: class uk.ac.manchester.cs.owl.owlapi.OWLAnnotationAssertionAxiomImpl at org.obolibrary.robot.OntologyHelper.addAxiomAnnotation(OntologyHelper.java:95) at org.obolibrary.robot.OntologyHelper.addAxiomAnnotation(OntologyHelper.java:71) at org.obolibrary.robot.OntologyHelper.addAxiomAnnotations(OntologyHelper.java:112) at org.obolibrary.robot.AnnotateCommand.execute(AnnotateCommand.java:254)...

Exact match configurations added for kg and api endpoints

HBA bridge unsatisfiable classes

13

When `uberon`, `uberon-bridge-to-hba` and `hba` ontologies merged and reasoned, 203 unsatisfiable classes are identified. ``` robot merge -I http://purl.obolibrary.org/obo/uberon/uberon.owl -I https://raw.githubusercontent.com/obophenotype/uberon/master/src/ontology/bridge/uberon-bridge-to-hba.obo -I https://raw.githubusercontent.com/obophenotype/ABA_Uberon/master/src/ontology/sources/10.ofn explain --reasoner ELK -M unsatisfiability --unsatisfiable all...

Support 0-many var input

3

Dosdp schema is [updated](https://github.com/INCATools/dead_simple_owl_design_patterns/issues/71) to support 0-many var inputs. With this schema update given supports are added: - Internal vars added to apply basic operations (such as join and regex)...