hkarakurt8742
hkarakurt8742
As you know some variants have multiple NM_ coded transcripts. For example in this variant http://myvariant.info/v1/variant/chrX:g.153296529G>T, there are 7 different HGVS coding transcripts. Is MyVariant.info have any system to choose...
Hello, I am trying to create index for "Homo_sapiens.GRCh38.dna.primary_assembly.fa" from Ensembl. I installed Kallisto using conda (kallisto 0.48.0) and tried to index using `kallisto index -i Homo_sapiens.idx Homo_sapiens.GRCh38.dna.primary_assembly.fa` and the...
Hello everyone, I am new at CNVKit. I installed it using conda and installed DNAcopy library to R but when I run cnvkit.py batch, I have this error: ` Traceback...
Hello, Thank you for amazing tool. I am new to CNV analysis using RNA-Seq. Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor...
Hello everyone, I am using Sierra and I keep getting this error for all PlotRelativeExpression functions (TSNE, UMAP, Box). `error in apply(expression.set, 1, function(x) { : dim(x) must have a...
Hello, I am using Sierra and I replicated all results from vignette. I tried to use with my own data with same steps but in DUTest step I have an...
Hello, I am using 10X datasets with Cellranger and I want to use Sierra for AS analysis. I am using Ensembl GRCh38 genome and GTF files and I build my...
Hello, I am relatively new in variant calling using scRNA-Seq. I have 17 datasets from 17 patients. I want to call the variants for each patient. I only need the...