Hirak Sarkar comments

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                                            Hirak Sarkar

TensorFlow 2.0

You have it here https://github.com/ageron/handson-ml2

Best options for quantifying a transcript fully contained within a larger transcript

Hi @jasonvrogers , This is a very interesting problem, and I (a senior Ph.D. student with @rob-p ) have been working with this kind of outlier cases for a while...

Difference in quantification using alignment-based mode

@rob-p thanks for tagging me. I missed the primary discussion and went over it. @reganhayward , thanks for posting this interesting phenomenon. Checking for ambiguity is data driven, there are...

Difference in quantification using alignment-based mode

Hi @rob-p , Great, I missed the `-d` option before, looking into it now.

Difference in quantification using alignment-based mode

Hi @reganhayward , I just did an analysis on the equivalence class you reported. Both of them are connected to other transcripts, connecting to `ENST00000374675.7` ``` ['ENST00000444757.5', 'ENST00000374677.8', 'ENST00000418477.6', 'ENST00000465516.1',...

Error in cellchat <- netEmbedding(cellchat, type = "functional") / UMAP Problems

@sqjin , It seems runUMAP is not working, is it possible to push a new version with uwot's umap?

Error from `plot_molecules` function

I am already using `MK.activate!(type = "png");` The below is the results of `B.plot_molecules(df_spatial)` ![image](https://user-images.githubusercontent.com/9473877/144727104-ba01ead9-77e7-40fc-acaa-16ded2300765.png) It stops working when I use the color column I think.. Edit @VPetukhov I have...

Possibly misleading error message for importing umap

Any update on this end! Getting the same error.

Error importing edward 1.3.5 with tensorflow 1.7.0

Any fix yet?