Hina Bandukwala

The following suggestions in this post worked for me. This is what I did: 1- As @f6v suggested - Installed gcc with homebrew 2- CC=/usr/local/bin/g++-10 pip install velocyto (according to...

I am also unable to read the hdf5 file with ``` load_velocyto_hdf5("KO_velocity.hdf5") --------------------------------------------------------------------------- NameError Traceback (most recent call last) in ----> 1 load_velocyto_hdf5("KO_velocity.hdf5") NameError: name 'load_velocyto_hdf5' is not defined ```...

Hi Joyce, Ahhh! Thank a lot for the information. I will take a look at the confidence scores and get back to you..

Hi Joyce, I calculated the Mahalanobis distance (per-cell) for both the real-query and the negative-control based on the code you provided: 1) Negative-control 2) Actual query The range of values...

Hi thanks for your reply! So I tried mapping another two datasets from my lab on to the reference (muscle query cells to muscle reference), and I am finding that...

Hello, I was able to successfully convert my integrated assay (with SCT used for normalization) into h5ad but I am unable to read it into scanpy. Scanpy: ``` adata =...