harshk95

Coordinates seem to be wrongly read from MouseLight neuron loaded as .swc

3

Hi, I tried to run the neruons.py example from the examples folder and downloaded the .swc file for one of the neurons in the Mouse Light database from the MouseLight...

Memory problem

8

When I try to preprocess videos bigger than my JAVA heap memory (34Gb, max allowed) I get the error below and I was wondering how can I analyse videos with...

Concatenating multiple runs

4

Hi, We had an issue with concatenating recordings from different triggers with data acquired with SpikeGLX from a NP1.0 probe. We followed the inline comments in 'sglx_multi_run_pipeline.py' using the fork...

Missing triggerdata.csv

3

Hi Timo, We have been using the JARVIS Acquisition tool for some time now (6x FLIR Blackfly as we mentioned in issues in the past) and were able to use...

[BUG] Unable to set alpha of add_brain_region when running from Jupyter Notebook

2

I am unable to set the alpha of the brain region added via the alpha argument. Without the argument set one can see with alpha = 1, however, for any...

[BUG] log.log when running two kernels importing brainrender

1

When attempting to import brainrender in two separate notebooks, the `Path(path).unlink()` in the __init__.py does not allow the log file to be deleted if another kernel is using the file....

unit_locations and use with registration of probe to CCF

3

Hi, I wanted to enquire if there were existing methods in spikeinterface to transform the unit locations computed into CCF space post probe registration for NPX probes in the IBL...

Kilosort 4 for Neuropixels 2 - multi shank

8

Hi, I have tried to look for a concerted tutorial for implementing KS4 for NPX2.0 probes but I might just be missing it in the docs. Is there a compiled...

Unable to parse this line

1

Hi I receive the following error > Unable to parse this line when trying to load a swc file morhoplogy. Visually it seems like verything is in order and I...