Harriet Alexander comments

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                                            Harriet Alexander

BCALM error with conda installation: segmentation fault

Same answer as #257 -- but this error went away when we upgraded to the BCALM master build. I think this might be more of a note from @taylorreiter than...

BCALM error: cannot create a union-find data structure, too many elements

They are-- but they are currently living on my HPC. We are running bcalm on many different abundance trimmed fasta files. It happened with two different sets of files so...

Running bcalm raises error: `cannot create a union-find data structure, too many elements.`

Thanks so much! We are trying to deal with some pretty complex samples... so I think that is likely the issue. We are trying a new run with the `-min-abundance...

Add -q flag to interleave-reads.py and extract-paired-reads.py

It would be nice to add the `-q` flag as it appears in `trim-low-abund.py` to `interleave-reads.py` and `extract-paired-reads.py`. I feel like it is taking a lot of energy (for lack...

hmmsearch was not run successfully

I was just coming to see if anyone else had run into this problem! I just updated the conda build of my env and it seems to have cleared up...