TJ

Results 7 comments of TJ

error : $ operator is invalid for atomic vectors

Not sure if this is the same, but I also had trouble running this line with the tutorial/vignette: model

TypeError: create() got an unexpected keyword argument 'matrix'

Hi, I'm running into the same issue. Any guidance would be much appreciated. I'm working with a smartSeq2 data set, currently just trying to learn how to create a `loom`...

TypeError: create() got an unexpected keyword argument 'matrix'

Thank you for the quick reply, Gioele. I tried running the following and get the same error: ``` velocyto run-smartseq2 -o /mycomputer/Desktop/outputfolder_1 *.bam gencode.gtf ``` ``` 2019-03-25 07:43:15,363 - DEBUG...

TypeError: create() got an unexpected keyword argument 'matrix'

I ran the following command in Terminal from the folder containing the `.bam` files. This was a test run with only 6 `.bam` files named A01 - A06. Unfortunately, I...

TypeError: create() got an unexpected keyword argument 'matrix'

I still haven't been able to get around this and therefore gave up on using this for now :/ I anticipate my dataset to have unspliced sequences as its generated...

TypeError: create() got an unexpected keyword argument 'matrix'

@Emma920 : I never figured this out unfortunately. I think STAR alignment now has a newer version that may make preprocessing here a little easier for velocyto. You may want...

re compiling bwa on mac (M1)

I was able to use `brew install bwa` and it went through! Thanks!