Hai Nguyen

things about speed + mouse wheel direction + global options

3

I've been trying few visualize program but VMD is the best one IMO, in term off rotating molecule, mouse sensitivity. Most of other programs give me a feeling of 'heavy'...

replay and play movie in full screen mode?

1

Hi, env: jupyter notebook is it easy for you to add - replay for movie? - having play control in full screen mode? I would I to click the play...

The links in this landing page are not working anymore: http://nglviewer.org/ngl/api/ e.g: https://arose.github.io/ngl/?script=showcase/ferredoxin Please update them if you have a chance. Thanks.

getOrientation does not return the same orientation that is previously set?

3

hi all, this happens for pretty large system. Please see the codepen here: https://codepen.io/hainm/pen/qeVmyx?editors=0011 In short: The input orientation is ``` [ 125.52164117716852, 0, 0, 0, 0, 16.37099796922495, 124.44947902382509, 0,...

Easy way to set/update unitcell's color?

5

Hi, This question was raised in [nglview a while ago](https://github.com/arose/nglview/issues/589#issuecomment-468705398) but I don't know how. Any idea how? thanks and cheers. PS: In NGL's webapp, I see the blue color...

Support xyz format?

1

Hi, currently NGL does not support .xyz format yet (It's kind of free format). This format is popular (?) in several packages (e.g: psi4, qcelemental, ase). https://en.wikipedia.org/wiki/XYZ_file_format Example: ``` 3...

comp.addRepresentation does not respect defaultAssembly param?

2

hi, This issue is originally from nglview (https://github.com/arose/nglview/issues/802#issuecomment-492709317). I am giving brief information (let me know if you need further information or code). Basically I want to set repr from...

Atom position is not updated correctly with Ubuntu 16.04 + Chrome

1

Hi, please see the detail in this `nglview` issue: https://github.com/arose/nglview/issues/799 * The file: https://github.com/arose/nglview/files/3167791/scan.pdb.zip * Affected with Ubuntu 16.04 + Chrome (fine with firefox) * The screenshot:  Thanks and...

https://github.com/Amber-MD/cpptraj/pull/736