CAFE

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make: *** [release/birthdeath.o] error 1

2

/pub/Anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -c -Wall -std=c11 -I cafe -I libtree -I libcommon -fopenmp -O3 -DNDEBUG -o release/cafe_family.o cafe/cafe_family.c /pub/Anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -c -Wall -std=c11 -I cafe -I libtree -I libcommon -fopenmp -O3 -DNDEBUG -o...

YuanhaoDing

ValueError: invalid literal for int() with base 10: '5_42'

8

Hi, I want to use cafe to do gene family study but when I run cafetutorial_report_analysis.py script , I met an error . Here is my script : $PYTHON cafetutorial_report_analysis.py...

shiyi-pan

Hi, when I run cafe(Version: 4.2.1), I met a problem ,it's my code `cafe cafetutorial_run2.sh` it's error formation: ``` Lambda : 0.00679833848891 & Score: 32365.745004 DONE: Lambda Search or setting,...

rillaxy

(memory_new) Error in memory allocation: 12: Cannot allocate memory

4

Hi, I have run CAFE 4.0.2 and get the following error: ----------------------------------------------------------- Family information: species.ogcount.txt Log: log-run2.txt The number of families is 37995 Root Family size : 1 ~ 2399...

zhangrengang

Cannot find cafetutorial_report_analysis file

3

Hi, The share of **cafetutorial_report_analysis.py** in the website: [https://iu.app.box.com/v/cafetutorial-files/folder/22161236877](url) has been removed. Could please upload a new copy of it to GitHub, or send it to my e-mail: [email protected] ?...

ZhangXu-CAS

CafeTutorial_report_analysis. py Error

5

When I ran CafeTutorial_report_analysis. py, I encountered an ImportError: No Module Named Cafecore. How to fix it

Bioinformatics-rookie

Hi, I'm trying to run a simple cafe analysis: ``` load -i PhyleticProfileHOGs.CafeInput.txt -p 0.01 -t 10 -l log_run1.txt tree (((((Hmel:0.02,Haoe:0.02):0.1,Herd:0.12):0.05,Eisa:0.17):0.01,Diul:0.18):0.02,Smor:0.2) lambda -s -t (((((1,1)1,1)1,1)1,1)1,1) ``` My `PhyleticProfileHOGs.CafeInput.txt` looks like...

francicco

Error in 'make'

10

(base) C19DMGD:CAFE leyu$ make g++ -c -Wall -std=c++11 -I cafe -I libtree -I libcommon -O3 -DNDEBUG -o release/cafe_commands.o cafe/cafe_commands.cpp cafe/cafe_commands.cpp:1065:12: error: call to 'abs' is ambiguous return std::abs(x - y)

le-yuan

an error occurred when 'make'

6

icc -c -Wall -std=c11 -I cafe -I libtree -I libcommon -fopenmp -O3 -DNDEBUG -o release/cafe_family.o cafe/cafe_family.c cafe/cafe_family.c(188): error: expected an expression for (int i = 0; i < pcf->num_species; i++)...

whoisleehom

Hi, I had run the cafe successfully. But there is no `cafetutorial_draw_tree.py` in the CAFE, could anyone send me the script to my email ([email protected])? Thanks a lot.

baizixiansheng