hahnlab
Cannot find cafetutorial_report_analysis file
Hi,
The share of cafetutorial_report_analysis.py in the website: https://iu.app.box.com/v/cafetutorial-files/folder/22161236877 has been removed. Could please upload a new copy of it to GitHub, or send it to my e-mail: [email protected] ?
Thank you very much!
Xu Zhang
The files are now available at https://github.com/hahnlab/cafe_tutorial .
Due to network reasons, I can't open the website for asking questions you provided, so I put forward my questions under this issue, hoping to get your answers.This is the result of running cafe under linux subsystem, and the software is the latest compiled version. Look forward for your reply.
(base) wtc@PC10-7742:~/anaconda3/bin$ cafe cafetutorial_run1.sh
Family information: filtered_cafe_input.txt Log: reports/log_run1.txttree The number of families is 12619 Root Family size : 1 ~ 112 Family size : 0 ~ 140 P-value: 0.01 Num of Threads: 4 Num of Random: 1000 cafe: ((((cat:68.710507,horse:68.710507):4.566782,cow:73.277289):20.722711,(((((chimp:4.444172,human:4.444172):6.682678,orang:11.126850):2.285855,gibbon:13.412706):7.211527,(macaque:4.567240,baboon:4.567240):16.056992):16.060702,marmoset:36.684935):57.315065):38.738021,(rat:36.302445,mouse:36.302445):96.435575): command not found
