hahia

icon company Xiamen University icon location Xiamen, China icon location single-cell, spatial omics

Results 5 comments of hahia

SaveH5Seurat error

> It seems that the file "tmp.h5Seurat" has been opened. You can try deleting the file and run SaveH5Seurat again. I delete the h5seurat file, but it still can't work

netVisual_diffInteraction: Error in quantile.default(abs(net), probs = 1 - top)

> @zqun1 Yes, please share me the data and I will take a look. @lizanyu I also have this problem when I do `netVisual_diffInteraction(cellchat, weight.scale = T, comparison = c('Normal',...

about batch correction

> Dear all, > > i would appreciate your opinions, comments, advises on the following please : > > we do have a two batches of scRNA-seq in CTRL (batch...

`reduce_dimensionality` on expression matrix filtered for highly variable genes?

I also wonder about this. Can we use highly variable genes or DEG between cluster as input to reduce_dimensionality()?

Error 'could not find function "counts"' when evaluating music_prop()

> Hello, I am using MuSiC v1.0.0 and I'm getting the following error when running the music_prop() function: > > Est.prop.Caris > Error in h(simpleError(msg, call)) : error in evaluating...